Development of an Okinawa Panel for biogeographic inference of Okinawans

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Development of an Okinawa Panel for biogeographic inference of Okinawans. / Nakanishi, Hiroaki; Pereira, Vania; Børsting, Claus; Tvedebrink, Torben; Takada, Aya; Saito, Kazuyuki.

I: Annals of Human Biology, Bind 50, Nr. 1, 2023, s. 436-441.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Nakanishi, H, Pereira, V, Børsting, C, Tvedebrink, T, Takada, A & Saito, K 2023, 'Development of an Okinawa Panel for biogeographic inference of Okinawans', Annals of Human Biology, bind 50, nr. 1, s. 436-441. https://doi.org/10.1080/03014460.2023.2257594

APA

Nakanishi, H., Pereira, V., Børsting, C., Tvedebrink, T., Takada, A., & Saito, K. (2023). Development of an Okinawa Panel for biogeographic inference of Okinawans. Annals of Human Biology, 50(1), 436-441. https://doi.org/10.1080/03014460.2023.2257594

Vancouver

Nakanishi H, Pereira V, Børsting C, Tvedebrink T, Takada A, Saito K. Development of an Okinawa Panel for biogeographic inference of Okinawans. Annals of Human Biology. 2023;50(1):436-441. https://doi.org/10.1080/03014460.2023.2257594

Author

Nakanishi, Hiroaki ; Pereira, Vania ; Børsting, Claus ; Tvedebrink, Torben ; Takada, Aya ; Saito, Kazuyuki. / Development of an Okinawa Panel for biogeographic inference of Okinawans. I: Annals of Human Biology. 2023 ; Bind 50, Nr. 1. s. 436-441.

Bibtex

@article{fe3180f1d9d34d88accf2e0643eab971,
title = "Development of an Okinawa Panel for biogeographic inference of Okinawans",
abstract = "BackgroundThe Precision ID Ancestry Panel with 165 SNP markers was unable to differentiate between mainland Japanese and Okinawa Japanese or to distinguish either of them from other East Asian populations.AimAn Okinawa panel was developed with the aim of further separating Okinawa Japanese individuals from mainland Japanese and other Asian groups. Seventy-five SNPs were selected using the most informative markers from the literature. Further, 22 SNPs were selected to separate Okinawa Japanese at minimum SNPs.Subjects and methodsSamples were collected from 48 unrelated individuals from mainland Japan and 46 unrelated residents of the Okinawa prefecture. Data were evaluated by STRUCTURE, principal component, and GenoGeographer analyses.ResultsThe 22 SNP set had similar levels of differentiation in STRUCTURE and PCA analyses as the 75 SNP set. GenoGeographer analysis showed that, out of the 46 Okinawa Japanese individuals, the 75 SNP and 22 SNP sets correctly assigned the Okinawan population as the most likely population of origin for 32 and 31 individuals, respectively.ConclusionNeither SNP set could completely differentiate between Okinawa Japanese and other Asian groups, however, these sets should be useful for crime investigation, when the sample, cost and time are limited.",
author = "Hiroaki Nakanishi and Vania Pereira and Claus B{\o}rsting and Torben Tvedebrink and Aya Takada and Kazuyuki Saito",
year = "2023",
doi = "10.1080/03014460.2023.2257594",
language = "English",
volume = "50",
pages = "436--441",
journal = "Annals of Human Biology",
issn = "0301-4460",
publisher = "Taylor & Francis",
number = "1",

}

RIS

TY - JOUR

T1 - Development of an Okinawa Panel for biogeographic inference of Okinawans

AU - Nakanishi, Hiroaki

AU - Pereira, Vania

AU - Børsting, Claus

AU - Tvedebrink, Torben

AU - Takada, Aya

AU - Saito, Kazuyuki

PY - 2023

Y1 - 2023

N2 - BackgroundThe Precision ID Ancestry Panel with 165 SNP markers was unable to differentiate between mainland Japanese and Okinawa Japanese or to distinguish either of them from other East Asian populations.AimAn Okinawa panel was developed with the aim of further separating Okinawa Japanese individuals from mainland Japanese and other Asian groups. Seventy-five SNPs were selected using the most informative markers from the literature. Further, 22 SNPs were selected to separate Okinawa Japanese at minimum SNPs.Subjects and methodsSamples were collected from 48 unrelated individuals from mainland Japan and 46 unrelated residents of the Okinawa prefecture. Data were evaluated by STRUCTURE, principal component, and GenoGeographer analyses.ResultsThe 22 SNP set had similar levels of differentiation in STRUCTURE and PCA analyses as the 75 SNP set. GenoGeographer analysis showed that, out of the 46 Okinawa Japanese individuals, the 75 SNP and 22 SNP sets correctly assigned the Okinawan population as the most likely population of origin for 32 and 31 individuals, respectively.ConclusionNeither SNP set could completely differentiate between Okinawa Japanese and other Asian groups, however, these sets should be useful for crime investigation, when the sample, cost and time are limited.

AB - BackgroundThe Precision ID Ancestry Panel with 165 SNP markers was unable to differentiate between mainland Japanese and Okinawa Japanese or to distinguish either of them from other East Asian populations.AimAn Okinawa panel was developed with the aim of further separating Okinawa Japanese individuals from mainland Japanese and other Asian groups. Seventy-five SNPs were selected using the most informative markers from the literature. Further, 22 SNPs were selected to separate Okinawa Japanese at minimum SNPs.Subjects and methodsSamples were collected from 48 unrelated individuals from mainland Japan and 46 unrelated residents of the Okinawa prefecture. Data were evaluated by STRUCTURE, principal component, and GenoGeographer analyses.ResultsThe 22 SNP set had similar levels of differentiation in STRUCTURE and PCA analyses as the 75 SNP set. GenoGeographer analysis showed that, out of the 46 Okinawa Japanese individuals, the 75 SNP and 22 SNP sets correctly assigned the Okinawan population as the most likely population of origin for 32 and 31 individuals, respectively.ConclusionNeither SNP set could completely differentiate between Okinawa Japanese and other Asian groups, however, these sets should be useful for crime investigation, when the sample, cost and time are limited.

U2 - 10.1080/03014460.2023.2257594

DO - 10.1080/03014460.2023.2257594

M3 - Journal article

C2 - 37812250

VL - 50

SP - 436

EP - 441

JO - Annals of Human Biology

JF - Annals of Human Biology

SN - 0301-4460

IS - 1

ER -

ID: 364498476